Table of Contents |
guest 2024-04-28 |
Computational medicine core to enhance research
and clinical applications in genomics
The Bioinformatics Platform is one of the Centre for Translational Biology (CTB) Technology Platforms at the Research Institute of the McGill University Health Centre (RI-MUHC). The Bioinformatics Platform professionals aim to accelerate genomics research and its applications in clinical practice, while responding to local needs in research, health services and industry arising from the ongoing genomic revolution. Their mission is to develop the bioinformatics and computational biology (B/CB) capacities at the RI-MUHC to ensure that researchers, and ultimately patients, derive maximum benefits from genomic data.
Providing analytic tools and support in computational genomics:
Supporting management and integration of laboratory and clinical data:
Accelerating the translation of computational genomic tools to healthcare uses:
Platform manager
Bioinformatician
SAIL Platform manager
Bioinformatician
Bioinformatician
These prices are given for information only.
To use our services or to obtain a quotation, please contact us.
Services/Instruments | RI-MUHC members | McGill | Academia | Industry |
---|---|---|---|---|
Whole Genome Sequencing (per sample) Includes reports, QCs for variants and CNV | $60 | $65 | $75 | Please contact us |
Whole Exome Sequencing (per sample) Includes reports, QCs for variants and CNV | $40 | $45 | $50 | Please contact us |
RNA-Seq expression analysis Case/Control Includes QCs, tables & figures for expression and pathway analysis | $700 | $800 | $900 | Please contact us |
Bioinformatics support (hourly) | $75 | $85 | $95 | Please contact us |
Development of Data Management System User specific security features, custom forms and reports, etc. | Please contact us |
514-934-1934, ext. 76406
Glen site, ES1.5500
Research Institute of the McGill University Health Center
1001 Bd Décarie, Montréal, QC H4A 3J1
RI-MUHC Bioinformatics Platform
McGill Initiative in Computational Medicine (MiCM)
McGill University and Génome Québec Innovation Centre (MUGQIC)
Canadian Centre for Computational Genomics (C3G)
McGill HPC - McGill University's centre for High Performance Computing (HPC)
GOBLET - the Global Organisation for Bioinformatics Learning, Education & Training
Tools
IGV - Integrative Genomics Viewer
SSHFS (Windows, Linux) - Access remote file system by SSH
HTSeq - Analysing high-throughput sequencing data with Python
vcfanno - Fast VCF annotator
cyvcf2 - Fast python parsing of VCF and BCF
Best practices & reference material
NIH Genomic Data Commons (GDC)
GEMSTAR, from The Transforming Genetic Medicine Initiative (TGMI)
Genome in a bottle (GIAB)
Variant databases
Genome browsers
Integrative Genomics Viewer (IGV)
Rare diseases
Online Mendelian Inheritance in Man (OMIM)
Cancer
The Variant Interpretation for Cancer Consortium (VICC)
Ontologies
Human Phenotype Ontology (HPO)