RI-MUHC Bioinformatics Platform
McGill Initiative in Computational Medicine (MiCM)
McGill University and Génome Québec Innovation Centre (MUGQIC)
Canadian Centre for Computational Genomics (C3G)
McGill HPC - McGill University's centre for High Performance Computing (HPC)
GOBLET - the Global Organisation for Bioinformatics Learning, Education & Training
Tools
IGV - Integrative Genomics Viewer
SSHFS (Windows, Linux) - Access remote file system by SSH
HTSeq - Analysing high-throughput sequencing data with Python
vcfanno - Fast VCF annotator
cyvcf2 - Fast python parsing of VCF and BCF
Best practices & reference material
NIH Genomic Data Commons (GDC)
GEMSTAR, from The Transforming Genetic Medicine Initiative (TGMI)
Genome in a bottle (GIAB)
Variant databases
Genome browsers
Integrative Genomics Viewer (IGV)
Rare diseases
Online Mendelian Inheritance in Man (OMIM)
Cancer
The Variant Interpretation for Cancer Consortium (VICC)
Ontologies
Human Phenotype Ontology (HPO)